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n2:pmcid: PMC0
bibo:doi: 10.1038%2Fsj.bjc.6605274
n10:contains: _:vb6295846 _:vb6295840 _:vb6295836

Subject Item: _:vb6295836
rdf:type: n10:Section
dc:title: materials and methods
n10:contains: _:vb6295837 _:vb6295838 _:vb6295839

Subject Item: _:vb6295837
rdf:type: n2:Context
rdf:value: was carried out separately for intraepithelial and stromal (tumour-associated stroma and/or perivascular spaces) tumour areas (each three high-power fields (HPF) at × 40 magnification), with scores adapted from Zhang et al (>>2003<<): Score 0=no staining; score 1=fewer than five positive lymphocytes per HPF; score 2=5–20 positive lymphocytes per HPF and score 3=more than 20 positive lymphocytes per HPF.
n2:mentions: n3:12529460

Subject Item: _:vb6295838
rdf:type: n2:Context
rdf:value: in a 100 μl elution buffer and each 10 μl DNA was used for PCR-based analysis of the TCR Vγ1-8,10 (tube A) and Vγ9,11 (tube B) chains using a modified protocol of Biomed-2 PCR and capillary electrophoresis analysis (van Dongen et al, >>2003<<). In brief, for tube A 10 μl of DNA was mixed with 25.5 μl water, 5 μl of 2.5 mM dNTPs, 5 μl of 20 mM MgCl2 PCR buffer, 0.5 μl of AmpliTaq Gold (Applied Biosystems, Darmstadt, Germany) and 1 μl each of primers Vγ1f, Vγ10, Jγ1.1/2.1 and
n2:mentions: n3:14671650

Subject Item: _:vb6295839
rdf:type: n2:Context
rdf:value: electropherogram traces were evaluated for the occurrence of distinct multiple (rarified) or single (clonal) peaks in the range of 150–250 base pairs (tube A products) and 110–210 base pairs (tube B products) (van Dongen et al, >>2003<<). For statistical analyses, cases were separated into those with polyclonal TCR Vγ gene rearrangements, and those with rarified and/or clonal TCR Vγ gene rearrangements.
n2:mentions: n3:14671650

Subject Item: _:vb6295840
rdf:type: n10:Section
dc:title: results
n10:contains: _:vb6295844 _:vb6295845 _:vb6295841 _:vb6295842 _:vb6295843

Subject Item: _:vb6295841
rdf:type: n2:Context
rdf:value: To assess whether TILs in ovarian carcinomas carried clonal TCR gene rearrangements, thereby indicating a potential recognition of a specific tumour cell antigen, we analysed TCRγ genes using the Biomed-2 protocol (van Dongen et al, >>2003<<). Appropriate DNA and PCR quality was obtained from 93 out of 100 (93%) ovarian carcinomas and from 19 out of 24 (79%) non-neoplastic ovaries.
n2:mentions: n3:14671650

Subject Item: _:vb6295842
rdf:type: n2:Context
rdf:value: The Her2/neu protein expression has been associated with clonal T lymphocytes in breast cancer patients (Peoples et al, >>1995<<; Goodell et al, 2008; Wiech et al, 2008), and strategies of immunotherapy eliciting antibody and CD8-positive T-cell responses against Her2/neu are being discussed (Disis et al, 2002).
n2:mentions: n3:7831305

Subject Item: _:vb6295843
rdf:type: n2:Context
rdf:value: The Her2/neu protein expression has been associated with clonal T lymphocytes in breast cancer patients (Peoples et al, 1995; Goodell et al, >>2008<<; Wiech et al, 2008), and strategies of immunotherapy eliciting antibody and CD8-positive T-cell responses against Her2/neu are being discussed (Disis et al, 2002).
n2:mentions: n3:18319334

Subject Item: _:vb6295844
rdf:type: n2:Context
rdf:value: The Her2/neu protein expression has been associated with clonal T lymphocytes in breast cancer patients (Peoples et al, 1995; Goodell et al, 2008; Wiech et al, >>2008<<), and strategies of immunotherapy eliciting antibody and CD8-positive T-cell responses against Her2/neu are being discussed (Disis et al, 2002).
n2:mentions: n3:18821935

Subject Item: _:vb6295845
rdf:type: n2:Context
rdf:value: in breast cancer patients (Peoples et al, 1995; Goodell et al, 2008; Wiech et al, 2008), and strategies of immunotherapy eliciting antibody and CD8-positive T-cell responses against Her2/neu are being discussed (Disis et al, >>2002<<). Therefore, we next investigated the Her2/neu protein expression in a subset of patients.
n2:mentions: n3:12039923

Subject Item: _:vb6295846
rdf:type: n10:Section
dc:title: discussion
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Subject Item: _:vb6295847
rdf:type: n2:Context
rdf:value: system and, in particular, the presence of TILs as a valuable, clinically relevant prognostic marker and as an immunological basis for the development of novel therapeutic strategies in patients with epithelial cancers (Parmiani, >>2005<<) such as adenocarcinomas of the lung (Dieu-Nosjean et al, 2008), the colorectum (Galon et al, 2006) and the breast (Sheu et al, 2008).
n2:mentions: n3:16371629

Subject Item: _:vb6295848
rdf:type: n2:Context
rdf:value: clinically relevant prognostic marker and as an immunological basis for the development of novel therapeutic strategies in patients with epithelial cancers (Parmiani, 2005) such as adenocarcinomas of the lung (Dieu-Nosjean et al, >>2008<<), the colorectum (Galon et al, 2006) and the breast (Sheu et al, 2008).
n2:mentions: n3:18802153

Subject Item: _:vb6295849
rdf:type: n2:Context
rdf:value: marker and as an immunological basis for the development of novel therapeutic strategies in patients with epithelial cancers (Parmiani, 2005) such as adenocarcinomas of the lung (Dieu-Nosjean et al, 2008), the colorectum (Galon et al, >>2006<<) and the breast (Sheu et al, 2008).
n2:mentions: n3:17008531

Subject Item: _:vb6295850
rdf:type: n2:Context
rdf:value: for the development of novel therapeutic strategies in patients with epithelial cancers (Parmiani, 2005) such as adenocarcinomas of the lung (Dieu-Nosjean et al, 2008), the colorectum (Galon et al, 2006) and the breast (Sheu et al, >>2008<<).
n2:mentions: n3:18656354

Subject Item: _:vb6295851
rdf:type: n2:Context
rdf:value: In particular, it was shown that high numbers of CD3-positive T cells are indicative for improved survival (Zhang et al, >>2003<<; Curiel et al, 2004; Raspollini et al, 2005; Sato et al, 2005; Hamanishi et al, 2007; Tomsová et al, 2008; Clarke et al, 2009; Leffers et al, 2009) and that this effect is mediated preferentially by the CD8-positive (cytotoxic) subtype of
n2:mentions: n3:12529460

Subject Item: _:vb6295852
rdf:type: n2:Context
rdf:value: In particular, it was shown that high numbers of CD3-positive T cells are indicative for improved survival (Zhang et al, 2003; Curiel et al, >>2004<<; Raspollini et al, 2005; Sato et al, 2005; Hamanishi et al, 2007; Tomsová et al, 2008; Clarke et al, 2009; Leffers et al, 2009) and that this effect is mediated preferentially by the CD8-positive (cytotoxic) subtype of CD3-positive T
n2:mentions: n3:15322536

Subject Item: _:vb6295853
rdf:type: n2:Context
rdf:value: In particular, it was shown that high numbers of CD3-positive T cells are indicative for improved survival (Zhang et al, 2003; Curiel et al, 2004; Raspollini et al, >>2005<<; Sato et al, 2005; Hamanishi et al, 2007; Tomsová et al, 2008; Clarke et al, 2009; Leffers et al, 2009) and that this effect is mediated preferentially by the CD8-positive (cytotoxic) subtype of CD3-positive T lymphocytes (Sato et al,
n2:mentions: n3:15699022

Subject Item: _:vb6295854
rdf:type: n2:Context
rdf:value: In particular, it was shown that high numbers of CD3-positive T cells are indicative for improved survival (Zhang et al, 2003; Curiel et al, 2004; Raspollini et al, 2005; Sato et al, >>2005<<; Hamanishi et al, 2007; Tomsová et al, 2008; Clarke et al, 2009; Leffers et al, 2009) and that this effect is mediated preferentially by the CD8-positive (cytotoxic) subtype of CD3-positive T lymphocytes (Sato et al, 2005; Hamanishi et
n2:mentions: n3:16344461

Subject Item: _:vb6295855
rdf:type: n2:Context
rdf:value: In particular, it was shown that high numbers of CD3-positive T cells are indicative for improved survival (Zhang et al, 2003; Curiel et al, 2004; Raspollini et al, 2005; Sato et al, 2005; Hamanishi et al, >>2007<<; Tomsová et al, 2008; Clarke et al, 2009; Leffers et al, 2009) and that this effect is mediated preferentially by the CD8-positive (cytotoxic) subtype of CD3-positive T lymphocytes (Sato et al, 2005; Hamanishi et al, 2007; Clarke et al,
n2:mentions: n3:17360651

Subject Item: _:vb6295856
rdf:type: n2:Context
rdf:value: In particular, it was shown that high numbers of CD3-positive T cells are indicative for improved survival (Zhang et al, 2003; Curiel et al, 2004; Raspollini et al, 2005; Sato et al, 2005; Hamanishi et al, 2007; Tomsová et al, >>2008<<; Clarke et al, 2009; Leffers et al, 2009) and that this effect is mediated preferentially by the CD8-positive (cytotoxic) subtype of CD3-positive T lymphocytes (Sato et al, 2005; Hamanishi et al, 2007; Clarke et al, 2009; Leffers et al,
n2:mentions: n3:18037158

Subject Item: _:vb6295857
rdf:type: n2:Context
rdf:value: it was shown that high numbers of CD3-positive T cells are indicative for improved survival (Zhang et al, 2003; Curiel et al, 2004; Raspollini et al, 2005; Sato et al, 2005; Hamanishi et al, 2007; Tomsová et al, 2008; Clarke et al, >>2009<<; Leffers et al, 2009) and that this effect is mediated preferentially by the CD8-positive (cytotoxic) subtype of CD3-positive T lymphocytes (Sato et al, 2005; Hamanishi et al, 2007; Clarke et al, 2009; Leffers et al, 2009).
n2:mentions: n3:19060844

Subject Item: _:vb6295858
rdf:type: n2:Context
rdf:value: high numbers of CD3-positive T cells are indicative for improved survival (Zhang et al, 2003; Curiel et al, 2004; Raspollini et al, 2005; Sato et al, 2005; Hamanishi et al, 2007; Tomsová et al, 2008; Clarke et al, 2009; Leffers et al, >>2009<<) and that this effect is mediated preferentially by the CD8-positive (cytotoxic) subtype of CD3-positive T lymphocytes (Sato et al, 2005; Hamanishi et al, 2007; Clarke et al, 2009; Leffers et al, 2009).
n2:mentions: n3:18791714

Subject Item: _:vb6295859
rdf:type: n2:Context
rdf:value: Sato et al, 2005; Hamanishi et al, 2007; Tomsová et al, 2008; Clarke et al, 2009; Leffers et al, 2009) and that this effect is mediated preferentially by the CD8-positive (cytotoxic) subtype of CD3-positive T lymphocytes (Sato et al, >>2005<<; Hamanishi et al, 2007; Clarke et al, 2009; Leffers et al, 2009).
n2:mentions: n3:16344461

Subject Item: _:vb6295860
rdf:type: n2:Context
rdf:value: et al, 2007; Tomsová et al, 2008; Clarke et al, 2009; Leffers et al, 2009) and that this effect is mediated preferentially by the CD8-positive (cytotoxic) subtype of CD3-positive T lymphocytes (Sato et al, 2005; Hamanishi et al, >>2007<<; Clarke et al, 2009; Leffers et al, 2009).
n2:mentions: n3:17360651

Subject Item: _:vb6295861
rdf:type: n2:Context
rdf:value: et al, 2008; Clarke et al, 2009; Leffers et al, 2009) and that this effect is mediated preferentially by the CD8-positive (cytotoxic) subtype of CD3-positive T lymphocytes (Sato et al, 2005; Hamanishi et al, 2007; Clarke et al, >>2009<<; Leffers et al, 2009).
n2:mentions: n3:19060844

Subject Item: _:vb6295862
rdf:type: n2:Context
rdf:value: et al, 2009; Leffers et al, 2009) and that this effect is mediated preferentially by the CD8-positive (cytotoxic) subtype of CD3-positive T lymphocytes (Sato et al, 2005; Hamanishi et al, 2007; Clarke et al, 2009; Leffers et al, >>2009<<). In contrast, the presence of the CD4-positive regulatory subtype of T lymphocytes (Treg; CD4+CD25+FoxP3+) seems to reduce tumour-specific immunity and results in poorer survival of patients with ovarian carcinomas (Curiel et al, 2004).
n2:mentions: n3:18791714

Subject Item: _:vb6295863
rdf:type: n2:Context
rdf:value: In contrast, the presence of the CD4-positive regulatory subtype of T lymphocytes (Treg; CD4+CD25+FoxP3+) seems to reduce tumour-specific immunity and results in poorer survival of patients with ovarian carcinomas (Curiel et al, >>2004<<). Moreover, as observed for colorectal cancers (Galon et al, 2006), the location of TILs within the tumour mass of ovarian carcinomas has been shown to be important for revealing a prognostic effect (Zhang et al, 2003; Sato et al, 2005;
n2:mentions: n3:15322536

Subject Item: _:vb6295864
rdf:type: n2:Context
rdf:value: Moreover, as observed for colorectal cancers (Galon et al, >>2006<<), the location of TILs within the tumour mass of ovarian carcinomas has been shown to be important for revealing a prognostic effect (Zhang et al, 2003; Sato et al, 2005; Clarke et al, 2009).
n2:mentions: n3:17008531

Subject Item: _:vb6295865
rdf:type: n2:Context
rdf:value: Moreover, as observed for colorectal cancers (Galon et al, 2006), the location of TILs within the tumour mass of ovarian carcinomas has been shown to be important for revealing a prognostic effect (Zhang et al, >>2003<<; Sato et al, 2005; Clarke et al, 2009).
n2:mentions: n3:12529460

Subject Item: _:vb6295866
rdf:type: n2:Context
rdf:value: Moreover, as observed for colorectal cancers (Galon et al, 2006), the location of TILs within the tumour mass of ovarian carcinomas has been shown to be important for revealing a prognostic effect (Zhang et al, 2003; Sato et al, >>2005<<; Clarke et al, 2009).
n2:mentions: n3:16344461

Subject Item: _:vb6295867
rdf:type: n2:Context
rdf:value: for colorectal cancers (Galon et al, 2006), the location of TILs within the tumour mass of ovarian carcinomas has been shown to be important for revealing a prognostic effect (Zhang et al, 2003; Sato et al, 2005; Clarke et al, >>2009<<).
n2:mentions: n3:19060844

Subject Item: _:vb6295868
rdf:type: n2:Context
rdf:value: does influence their prognostic/predictive value and whether the TILs detected within ovarian carcinomas are clonally restricted and respond to a specific tumour-specific antigen, such as the candidate protein Her2/neu (Peoples et al, >>1995<<; Goodell et al, 2008; Wiech et al, 2008).
n2:mentions: n3:7831305

Subject Item: _:vb6295869
rdf:type: n2:Context
rdf:value: prognostic/predictive value and whether the TILs detected within ovarian carcinomas are clonally restricted and respond to a specific tumour-specific antigen, such as the candidate protein Her2/neu (Peoples et al, 1995; Goodell et al, >>2008<<; Wiech et al, 2008).
n2:mentions: n3:18319334

Subject Item: _:vb6295870
rdf:type: n2:Context
rdf:value: value and whether the TILs detected within ovarian carcinomas are clonally restricted and respond to a specific tumour-specific antigen, such as the candidate protein Her2/neu (Peoples et al, 1995; Goodell et al, 2008; Wiech et al, >>2008<<). In this study, we addressed these issues in a group of stage III ovarian carcinoma patients, further stratified into clinically relevant sub-groups of optimally debulked or optimally debulked and adjuvant paclitaxel/carboplatin-treated
n2:mentions: n3:18821935

Subject Item: _:vb6295871
rdf:type: n2:Context
rdf:value: Similar to previous studies (Zhang et al, >>2003<<; Curiel et al, 2004; Raspollini et al, 2005; Sato et al, 2005; Hamanishi et al, 2007; Tomsová et al, 2008; Clarke et al, 2009; Leffers et al, 2009), we evaluated the number and exact localisation of TILs within ovarian carcinomas and
n2:mentions: n3:12529460

Subject Item: _:vb6295872
rdf:type: n2:Context
rdf:value: Similar to previous studies (Zhang et al, 2003; Curiel et al, >>2004<<; Raspollini et al, 2005; Sato et al, 2005; Hamanishi et al, 2007; Tomsová et al, 2008; Clarke et al, 2009; Leffers et al, 2009), we evaluated the number and exact localisation of TILs within ovarian carcinomas and included the entire
n2:mentions: n3:15322536

Subject Item: _:vb6295873
rdf:type: n2:Context
rdf:value: Similar to previous studies (Zhang et al, 2003; Curiel et al, 2004; Raspollini et al, >>2005<<; Sato et al, 2005; Hamanishi et al, 2007; Tomsová et al, 2008; Clarke et al, 2009; Leffers et al, 2009), we evaluated the number and exact localisation of TILs within ovarian carcinomas and included the entire information in statistical
n2:mentions: n3:15699022

Subject Item: _:vb6295874
rdf:type: n2:Context
rdf:value: Similar to previous studies (Zhang et al, 2003; Curiel et al, 2004; Raspollini et al, 2005; Sato et al, >>2005<<; Hamanishi et al, 2007; Tomsová et al, 2008; Clarke et al, 2009; Leffers et al, 2009), we evaluated the number and exact localisation of TILs within ovarian carcinomas and included the entire information in statistical analyses, without
n2:mentions: n3:16344461

Subject Item: _:vb6295875
rdf:type: n2:Context
rdf:value: Similar to previous studies (Zhang et al, 2003; Curiel et al, 2004; Raspollini et al, 2005; Sato et al, 2005; Hamanishi et al, >>2007<<; Tomsová et al, 2008; Clarke et al, 2009; Leffers et al, 2009), we evaluated the number and exact localisation of TILs within ovarian carcinomas and included the entire information in statistical analyses, without using a simplified
n2:mentions: n3:17360651

Subject Item: _:vb6295876
rdf:type: n2:Context
rdf:value: Similar to previous studies (Zhang et al, 2003; Curiel et al, 2004; Raspollini et al, 2005; Sato et al, 2005; Hamanishi et al, 2007; Tomsová et al, >>2008<<; Clarke et al, 2009; Leffers et al, 2009), we evaluated the number and exact localisation of TILs within ovarian carcinomas and included the entire information in statistical analyses, without using a simplified cutoff for correlation of
n2:mentions: n3:18037158

Subject Item: _:vb6295877
rdf:type: n2:Context
rdf:value: Similar to previous studies (Zhang et al, 2003; Curiel et al, 2004; Raspollini et al, 2005; Sato et al, 2005; Hamanishi et al, 2007; Tomsová et al, 2008; Clarke et al, >>2009<<; Leffers et al, 2009), we evaluated the number and exact localisation of TILs within ovarian carcinomas and included the entire information in statistical analyses, without using a simplified cutoff for correlation of ‘negative’ or
n2:mentions: n3:19060844

Subject Item: _:vb6295878
rdf:type: n2:Context
rdf:value: Similar to previous studies (Zhang et al, 2003; Curiel et al, 2004; Raspollini et al, 2005; Sato et al, 2005; Hamanishi et al, 2007; Tomsová et al, 2008; Clarke et al, 2009; Leffers et al, >>2009<<), we evaluated the number and exact localisation of TILs within ovarian carcinomas and included the entire information in statistical analyses, without using a simplified cutoff for correlation of ‘negative’ or ‘positive’ TILs with
n2:mentions: n3:18791714

Subject Item: _:vb6295879
rdf:type: n2:Context
rdf:value: Similar to the study by Zhang et al (>>2003<<), we correlated the presence of different numbers of stromal and intraepithelial CD20-, CD3-, CD8- and CD4-positive TILs to clinico-pathological variables and survival in a homogeneous group of patients.
n2:mentions: n3:12529460

Subject Item: _:vb6295880
rdf:type: n2:Context
rdf:value: Furthermore, we did not find a significant correlation between the number of CD4-positive T lymphocytes and poor survival, as observed by the specific analysis of the CD4+CD25+FOXP3+ Treg subset of T lymphocytes (Curiel et al, >>2004<<). The analysis of all CD4-positive T lymphocytes in our study may, however, have hidden such a correlation, especially as CD4 staining alone rather detects the large majority of CD4-positive helper T cells than the minority of Tregs.
n2:mentions: n3:15322536

Subject Item: _:vb6295881
rdf:type: n2:Context
rdf:value: More importantly, we confirmed and extended previous studies on the role of CD8-positive TILs (Sato et al, >>2005<<; Hamanishi et al, 2007; Clarke et al, 2009; Leffers et al, 2009).
n2:mentions: n3:16344461

Subject Item: _:vb6295882
rdf:type: n2:Context
rdf:value: More importantly, we confirmed and extended previous studies on the role of CD8-positive TILs (Sato et al, 2005; Hamanishi et al, >>2007<<; Clarke et al, 2009; Leffers et al, 2009).
n2:mentions: n3:17360651

Subject Item: _:vb6295883
rdf:type: n2:Context
rdf:value: More importantly, we confirmed and extended previous studies on the role of CD8-positive TILs (Sato et al, 2005; Hamanishi et al, 2007; Clarke et al, >>2009<<; Leffers et al, 2009).
n2:mentions: n3:19060844

Subject Item: _:vb6295884
rdf:type: n2:Context
rdf:value: More importantly, we confirmed and extended previous studies on the role of CD8-positive TILs (Sato et al, 2005; Hamanishi et al, 2007; Clarke et al, 2009; Leffers et al, >>2009<<). The presence of high numbers of intraepithelial, but not stromal, CD8-positive T lymphocytes was of uni- and multivariate prognostic benefit for stage III ovarian cancer patients, especially in the large sub-group of patients receiving
n2:mentions: n3:18791714

Subject Item: _:vb6295885
rdf:type: n2:Context
rdf:value: Interestingly, Tsuda et al, >>2007<< showed that Taxol stimulates the immunogenic potential of CD8-positive T cells in vitro, an effect that may be further exploited in current therapeutic studies (Disis et al, 2002).
n2:mentions: n3:17804754

Subject Item: _:vb6295886
rdf:type: n2:Context
rdf:value: Interestingly, Tsuda et al, 2007 showed that Taxol stimulates the immunogenic potential of CD8-positive T cells in vitro, an effect that may be further exploited in current therapeutic studies (Disis et al, >>2002<<).
n2:mentions: n3:12039923

Subject Item: _:vb6295887
rdf:type: n2:Context
rdf:value: infiltrating stage III ovarian carcinomas are shifted to rarified or clonal TCRγ gene rearrangements, an indication of the expansion of individual T-cell clones, as can be also observed for T-cell malignancies (van Dongen et al, >>2003<<). Clonal restriction occurred for TCR Vγ1-8 or Vγ10 chains in 6 out of 93 (6.5%) and for Vγ9 or Vγ11 chains in 9 out of 93 (9.7%) cases.
n2:mentions: n3:14671650

Subject Item: _:vb6295888
rdf:type: n2:Context
rdf:value: Our data extend and specify previous findings by Raspollini et al (>>2005<<), who described positive PCR products for TCR Vγ gene rearrangements in 31.3% of serous ovarian carcinomas, without stratifying poly-, oligo- or monoclonal TCRγ gene rearrangements.
n2:mentions: n3:15699022

Subject Item: _:vb6295889
rdf:type: n2:Context
rdf:value: Nevertheless, as restricted usage of TCR Vγ-Jγ gene rearrangements may also occur in normal individuals (Kohsaka et al, >>1993<<) and as TCRβ gene rearrangements (Peoples et al, 1993), which may even further support the readout of clonality analysis (van Dongen et al, 2003), were not studied here, the results should be interpreted carefully.
n2:mentions: n3:7678601

Subject Item: _:vb6295890
rdf:type: n2:Context
rdf:value: Nevertheless, as restricted usage of TCR Vγ-Jγ gene rearrangements may also occur in normal individuals (Kohsaka et al, 1993) and as TCRβ gene rearrangements (Peoples et al, >>1993<<), which may even further support the readout of clonality analysis (van Dongen et al, 2003), were not studied here, the results should be interpreted carefully.
n2:mentions: n3:8228239

Subject Item: _:vb6295891
rdf:type: n2:Context
rdf:value: of TCR Vγ-Jγ gene rearrangements may also occur in normal individuals (Kohsaka et al, 1993) and as TCRβ gene rearrangements (Peoples et al, 1993), which may even further support the readout of clonality analysis (van Dongen et al, >>2003<<), were not studied here, the results should be interpreted carefully.
n2:mentions: n3:14671650

Subject Item: _:vb6295892
rdf:type: n2:Context
rdf:value: advanced studies on the nature of TIL clonality in ovarian carcinomas, for example, also including complementary determining region (CDR3) spectratyping of (single) microdissected TILs and reconstitution of TCR chains (Hofbauer et al, >>2003<<; Seitz et al, 2006).
n2:mentions: n3:12651958

Subject Item: _:vb6295893
rdf:type: n2:Context
rdf:value: the nature of TIL clonality in ovarian carcinomas, for example, also including complementary determining region (CDR3) spectratyping of (single) microdissected TILs and reconstitution of TCR chains (Hofbauer et al, 2003; Seitz et al, >>2006<<).
n2:mentions: n3:16882720

Subject Item: _:vb6295894
rdf:type: n2:Context
rdf:value: the tumour and its progression, we investigated whether the tumour-cell-specific expression of Her2/neu protein in ovarian carcinomas may represent a candidate target antigen of TILs, as suggested for breast cancer (Peoples et al, >>1995<<; Goodell et al, 2008; Wiech et al, 2008) and as shown in a murine model of ovarian cancer (Yang et al, 2007).
n2:mentions: n3:7831305

Subject Item: _:vb6295895
rdf:type: n2:Context
rdf:value: progression, we investigated whether the tumour-cell-specific expression of Her2/neu protein in ovarian carcinomas may represent a candidate target antigen of TILs, as suggested for breast cancer (Peoples et al, 1995; Goodell et al, >>2008<<; Wiech et al, 2008) and as shown in a murine model of ovarian cancer (Yang et al, 2007).
n2:mentions: n3:18319334

Subject Item: _:vb6295896
rdf:type: n2:Context
rdf:value: whether the tumour-cell-specific expression of Her2/neu protein in ovarian carcinomas may represent a candidate target antigen of TILs, as suggested for breast cancer (Peoples et al, 1995; Goodell et al, 2008; Wiech et al, >>2008<<) and as shown in a murine model of ovarian cancer (Yang et al, 2007).
n2:mentions: n3:18821935

Subject Item: _:vb6295897
rdf:type: n2:Context
rdf:value: protein in ovarian carcinomas may represent a candidate target antigen of TILs, as suggested for breast cancer (Peoples et al, 1995; Goodell et al, 2008; Wiech et al, 2008) and as shown in a murine model of ovarian cancer (Yang et al, >>2007<<). However, the correlation of Her2/neu protein expression to the presence of TILs and TCRγ gene rearrangements in our group of ovarian carcinomas revealed that this is not the case, suggesting that other tumour antigens may be more
n2:mentions: n3:18056198

Subject Item: _:vb6295898
rdf:type: n2:Context
rdf:value: Indeed, Milne et al (>>2008<<) have proposed NY-ESO-1, a 22 kDa protein encoded on chromosome Xq28 and belonging to the so-called ‘cancer-testis antigen’, as the target antigen of TILs in ovarian carcinomas.
n2:mentions: n3:18923710

Subject Item: _:vb417131752
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 19
n2:hasRelevantPaperId: n3:16344461

Subject Item: _:vb417131753
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 19
n2:hasRelevantPaperId: n3:12529460

Subject Item: _:vb417131754
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 14
n2:hasRelevantPaperId: n3:18037158

Subject Item: _:vb417131755
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 14
n2:hasRelevantPaperId: n3:17360651

Subject Item: _:vb417131756
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 14
n2:hasRelevantPaperId: n3:18791714

Subject Item: _:vb417131757
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 14
n2:hasRelevantPaperId: n3:15322536

Subject Item: _:vb417131758
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 12
n2:hasRelevantPaperId: n3:19472394

Subject Item: _:vb417131759
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 12
n2:hasRelevantPaperId: n3:19060844

Subject Item: _:vb417131760
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 11
n2:hasRelevantPaperId: n3:19641607

Subject Item: _:vb417131761
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 10
n2:hasRelevantPaperId: n3:19047092

Subject Item: _:vb417131762
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 7
n2:hasRelevantPaperId: n3:22040834

Subject Item: _:vb417131763
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 7
n2:hasRelevantPaperId: n3:18314181

Subject Item: _:vb417131764
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 7
n2:hasRelevantPaperId: n3:26871470

Subject Item: _:vb417131765
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 7
n2:hasRelevantPaperId: n3:18519766

Subject Item: _:vb417131766
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 6
n2:hasRelevantPaperId: n3:26625204

Subject Item: _:vb417131767
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 6
n2:hasRelevantPaperId: n3:15699022

Subject Item: _:vb417131768
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 6
n2:hasRelevantPaperId: n3:16322292

Subject Item: _:vb417131769
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 6
n2:hasRelevantPaperId: n3:18287062

Subject Item: _:vb417131770
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 6
n2:hasRelevantPaperId: n3:20006900

Subject Item: _:vb417131771
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 5
n2:hasRelevantPaperId: n3:26972336

Subject Item: _:vb417131772
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 5
n2:hasRelevantPaperId: n3:16960692

Subject Item: _:vb417131773
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 5
n2:hasRelevantPaperId: n3:12704383

Subject Item: _:vb417131774
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 5
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Subject Item: _:vb417131775
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 5
n2:hasRelevantPaperId: n3:17875732

Subject Item: _:vb417131776
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 5
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Subject Item: _:vb417131777
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 5
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Subject Item: _:vb417131778
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 4
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Subject Item: _:vb417131779
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 4
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Subject Item: _:vb417131780
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 4
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Subject Item: _:vb417131781
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 4
n2:hasRelevantPaperId: n3:2004379

Subject Item: _:vb417131782
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 4
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Subject Item: _:vb417131783
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 4
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Subject Item: _:vb417131784
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 4
n2:hasRelevantPaperId: n3:27470997

Subject Item: _:vb417131785
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 4
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Subject Item: _:vb417131786
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 4
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Subject Item: _:vb417131787
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 4
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rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 4
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rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 4
n2:hasRelevantPaperId: n3:19470694

Subject Item: _:vb417131790
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 3
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rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 3
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Subject Item: _:vb417131792
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 3
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Subject Item: _:vb417131793
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 3
n2:hasRelevantPaperId: n3:18157142

Subject Item: _:vb417131794
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 3
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Subject Item: _:vb417131795
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 3
n2:hasRelevantPaperId: n3:21551365

Subject Item: _:vb417131796
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 3
n2:hasRelevantPaperId: n3:28846888

Subject Item: _:vb417131797
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 3
n2:hasRelevantPaperId: n3:19661290

Subject Item: _:vb417131798
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 3
n2:hasRelevantPaperId: n3:26351349

Subject Item: _:vb417131799
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 3
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Subject Item: _:vb417131800
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 3
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Subject Item: _:vb417131801
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 3
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Subject Item: _:vb417131802
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 3
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Subject Item: _:vb417131803
rdf:type: n2:RelevantBibliographicResource
n2:RelevantScore: 3
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n2:RelevantScore: 3
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Subject Item: _:vb417131805
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n2:RelevantScore: 3
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n2:RelevantScore: 3
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n2:RelevantScore: 3
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n2:RelevantScore: 3
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n2:RelevantScore: 3
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n2:RelevantScore: 3
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Subject Item: _:vb417131817
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