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n2:pmcid: PMC0
bibo:doi: 10.1093%2Fnar%2Fgkq967
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Subject Item: _:vb9064140
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dc:title: the european nucleotide archive
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Subject Item: _:vb9064141
rdf:type: n2:Context
rdf:value: The ENA works closely together with NCBI (>>1<<) and DDBJ (2) as partners in the International Nucleotide Sequence Database Collaboration (3).
n2:mentions: n3:19910366

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rdf:value: The ENA works closely together with NCBI (1) and DDBJ (>>2<<) as partners in the International Nucleotide Sequence Database Collaboration (3).
n2:mentions: n3:19850725

Subject Item: _:vb9064143
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dc:title: submissions of raw data from next generation platforms
n6:contains: _:vb9064144

Subject Item: _:vb9064144
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rdf:value: SRA will shortly accept sequence read submissions in Binary Alignment/Map (BAM) format (>>4<<). A BAM file is a binary compressed representation of the Sequence Alignment/Map (SAM) format.
n2:mentions: n3:19505943

Subject Item: _:vb9064145
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dc:title: submissions of assembled and annotated sequences
n6:contains: _:vb9064146

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rdf:value: It contains a large diversity of data from patent, expressed sequence tag, whole genome shotgun and other high-throughput sequences, through genomic assemblies and richly annotated sequence fragments to whole replicons (>>5<<). Submitters should navigate to http://www.ebi.ac.uk/ena/about/page.php?page=submissions for access to all submission services. Advice regarding EMBL-Bank submissions is available from datasubs@ebi.ac.uk.
n2:mentions: n3:19906712

Subject Item: _:vb9064147
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dc:title: data search, browsing and retrieval
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Subject Item: _:vb9064148
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rdf:value: For example, the following URL returns the complete mitochondrial genome for ‘Ursus spelaeus’ (cave bear) (>>6<<): http://www.ebi.ac.uk/ena/data/view/FM177760 (Figure 1). Data can be queried using the EB-Eye free text search functionality available in the header section of all EBI web pages (7). ENA results are available under the ‘Nucleotide
n2:mentions: n3:18662376

Subject Item: _:vb9064149
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rdf:value: Data can be queried using the EB-Eye free text search functionality available in the header section of all EBI web pages (>>7<<). ENA results are available under the ‘Nucleotide Sequences’ category and linked to the ENA Browser. Free text search is also available from the ENA home page: http://www.ebi.ac.uk/ena. Figure 1.
n2:mentions: n3:20150321

Subject Item: _:vb9064150
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rdf:value: Rapid and comprehensive sequence similarity searches against ENA data are supported through a new service based on Exonerate (>>8<<) technology: http://www.ebi.ac.uk/ena/search/ (Goodgame, N., manuscript in preparation).
n2:mentions: n3:15713233

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rdf:value: Experimental search support for a limited number of raw reads is provided through De-Bruijn servers based on Velvet (>>9<<), using the Exonerate client-server protocol and being fully integrated with our search service.
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